Nature Communications · 2018 · 67 citations · 61 references
Life SciencesMolecular BiologyOncologyGene ExpressionMolecular OncologyTranscriptional RegulationCancer EpigeneticsCancer EpigenomicsChromatinEpigenetic Regulation In CancerPromoter RegulationTumor Suppressor GenesAcute Myeloid Leukemia BiologyAcute Myeloid Leukemia ProgressionEpigenetic Regulation Of HematopoiesisH3k27 TrimethylationHematopoietic Stem Cell Transcriptional RegulationMyeloid-derived Suppressor Cell Epigenetic RegulationOncogenic TransformationPolycomb Group Repression
JMJD3, a stress-inducible H3K27 demethylase, plays a critical regulatory role in the initiation and progression of malignant hematopoiesis. However, how this histone modifier affects in a cell type-dependent manner remains unclear. Here, we show that in contrast to its oncogenic effect in preleukemia state and lymphoid malignancies, JMJD3 relieves the differentiation-arrest of certain subtypes (such as M2 and M3) of acute myeloid leukemia (AML) cells. RNA sequencing and ChIP-PCR analyses revealed that JMJD3 exerts anti-AML effect by directly modulating H3K4 and H3K27 methylation levels to activate the expression of a number of key myelopoietic regulatory genes. Mechanistic exploration identified a physical and functional association of JMJD3 with C/EBPβ that presides the regulatory network of JMJD3. Thus, the leukemia regulatory role of JMJD3 varies in a disease phase- and lineage-dependent manner, and acts as a potential oncorepressor in certain subsets of AML largely by coupling to C/EBPβ-centered myelopoietic program.
61
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Min Xiu, Juanjuan Xing, Shaoqing Yu et al. · Cellular Physiology and Biochemistry · 2017 · 5.8K citations · Full text
Summaries of Affymetrix GeneChip probe level data
Rafael A. Irizarry · Nucleic Acids Research · 2003 · 5K citations · Full text