Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell, Adam Roberts, Loyal A. Goff, +7

Nature Protocols

Differential GeneNatural SciencesGeneticsRna BiologyMolecular Biology +9

Near-optimal probabilistic RNA-seq quantification

Nicolas Bray, Harold Pimentel, Páll Melsted, +1

Nature Biotechnology

Functional GenomicsEngineeringGeneticsRna Structure PredictionComputational Biology +5

PDGF-D is a specific, protease-activated ligand for the PDGF β-receptor

Erika Bergsten, Marko Uutela, Xuri Li, +5

Nature Cell Biology

Human GrowthReceptor Tyrosine KinaseImmunologyFibroblast Growth FactorMedicine +3

A landscape effect in tenosynovial giant-cell tumor from activation of CSF1 expression by a translocation in a minority of tumor cells

Robert B. West, Brian P. Rubin, Melinda A. Miller, +14

Proceedings of the National Academy of Sciences

Tumoral PathologyTenosynovial Giant-cell TumorMalignant DiseaseMedicineImmunology +12

Deregulation of the platelet-derived growth factor β-chain gene via fusion with collagen gene COL1A1 in dermatof ibrosarcoma protuberans and giant-cell fibroblastoma

Marie-Pierre Simon, Florence Pédeutour, Nicolas Sirvent, +14

Nature Genetics

Giant-cell FibroblastomaPathologyDermatof Ibrosarcoma ProtuberansFibroblast Growth FactorCell Proliferation +7

PDGF-D, a new protease-activated growth factor

William J. LaRochelle, Michael Jeffers, William F. McDonald, +15

Nature Cell Biology

Growth HormoneHuman GrowthFibroblast Growth FactorCell GrowthMedicine +2

Blocking Platelet-Derived Growth Factor-D/Platelet-Derived Growth Factor Receptor β Signaling Inhibits Human Renal Cell Carcinoma Progression in an Orthotopic Mouse Model

Lei Xu, Ricky T. Tong, David Cochran, +1

Cancer Research

Detection of MDM2-CDK4 Amplification by Fluorescence In Situ Hybridization in 200 Paraffin-embedded Tumor Samples: Utility in Diagnosing Adipocytic Lesions and Comparison With Immunohistochemistry and Real-time PCR

Nicolas Sirvent, Jean‐Michel Coindre, Georges Maire, +6

The American Journal of Surgical Pathology

EngineeringPathologyTumor BiologyMdm2-cdk4 AmplificationCancer Detection +14

SMARCA4 inactivation defines a group of undifferentiated thoracic malignancies transcriptionally related to BAF-deficient sarcomas

François Le Loarer, Sarah Watson, Gaëlle Pierron, +29

Nature Genetics

Malignant DiseaseMedicineCancer Cell BiologyPathologySmarca4 Inactivation +9

Remodeling of the extracellular matrix through overexpression of collagen VI contributes to cisplatin resistance in ovarian cancer cells

Cheryl A. Sherman‐Baust, Ashani T. Weeraratna, Letícia Batista Azevedo Rangel, +5

Cancer Cell

Collagen ViHealth SciencesMedicineExtracellular MatrixCell-matrix Interaction +9