Comparative transcriptome analysis reveals the regulatory networks of cytokinin in promoting the floral feminization in the oil plant Sapium sebiferum

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 22.5K citations · Full text

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.1K citations

Developmental Biology, Functional Genomics, Rna Biology +10

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

Bioinformatics · 2005 · 11.8K citations · Full text

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Brian J. Haas, Alexie Papanicolaou, Moran Yassour et al. · Nature Protocols · 2013 · 8.7K citations

Functional Genomics, Medicine, Genetics +14

KEGG for integration and interpretation of large-scale molecular data sets

Minoru Kanehisa, Susumu Goto, Yoko Sato et al. · Nucleic Acids Research · 2011 · 4.9K citations · Full text

Engineering, Genetics, Genomics +18