Concepedia

Transcriptome profiling helps to identify potential and true molecular switches of stealth to brute force behavior in Pectobacterium atrosepticum during systemic colonization of tobacco plants

Vladimir Gorshkov, Rim F. Gubaev, Olga Petrova, Amina G. Daminova, Natalia Gogoleva, Marina Ageeva, Olga Parfirova, Maxim Prokchorchik, Yevgeny Nikolaichik, Yuri Gogolev

European Journal of Plant Pathology · 2018 · 75 citations · 52 references

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52

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 66.2K citations · Full text

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 42.7K citations · Full text

Near-optimal probabilistic RNA-seq quantification

Nicolas Bray, Harold Pimentel, Páll Melsted et al. · Nature Biotechnology · 2016 · 10.4K citations

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SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

Evguenia Kopylova, Laurent Noé, Hélène Touzet · Bioinformatics · 2012 · 3.1K citations · Full text

Oxidative stress in bacteria and protein damage by reactive oxygen species.

Elisa Cabiscol, Jordi Tamarit, Joaquim Ros · PubMed · 2000 · 1.4K citations