Journal of Natural Products · 2018 · 43 citations · 32 references
A dual-purpose strategy aimed at enhancing the binding affinity for microtubules and improving the water solubility of docetaxel led to the design and synthesis of a series of C-2- and C-3'-modified analogues. Both aims were realized when the C-3' phenyl group present in docetaxel was replaced with a propargyl alcohol. The resulting compound, 3f, was able to overcome drug resistance in cultured P-gp-overexpressing tumor cells and showed greater activity than docetaxel against drug-resistant A2780/AD ovarian cancer xenografts in mice. In addition, the considerably lower hydrophobicity of 3f relative to both docetaxel and paclitaxel led to better aqueous solubility. A molecular model of tubulin-bound 3f revealed novel hydrogen-bonding interactions between the propargyl alcohol and the polar environment provided by the side chains of Ser236, Glu27, and Arg320.
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ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB
James Maier, Carmenza Martinez, Koushik Kasavajhala et al. · Journal of Chemical Theory and Computation · 2015 · 10.6K citations · Full text
Structural Bioinformatics, Biomolecular Structure Prediction, Amber Ff12sb Parameter +24
Ramu Anandakrishnan, Boris Aguilar, Alexey V. Onufriev · Nucleic Acids Research · 2012 · 1.8K citations · Full text
Engineering, Explicit Solvent Md, Atomistic Molecular Modeling +17