Ramu Anandakrishnan

H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations

Ramu Anandakrishnan, Boris Aguilar, Alexey V. Onufriev · Nucleic Acids Research · 2012 · 1.8K citations · Full text

Engineering, Explicit Solvent Md, Atomistic Molecular Modeling +17

Building Water Models: A Different Approach

Saeed Izadi, Ramu Anandakrishnan, Alexey V. Onufriev · The Journal of Physical Chemistry Letters · 2014 · 1.3K citations · Full text

Engineering, Water Resource System, Rigid Models +17

Speed of Conformational Change: Comparing Explicit and Implicit Solvent Molecular Dynamics Simulations

Ramu Anandakrishnan, Aleksander Drozdetski, Ross C. Walker et al. · Biophysical Journal · 2015 · 197 citations · Full text

Engineering, Natural Sciences, Molecular Biology +9

Modulation of nucleosomal DNA accessibility via charge-altering post-translational modifications in histone core

Andrew T. Fenley, Ramu Anandakrishnan, Yared H. Kidane et al. · Epigenetics & Chromatin · 2018 · 97 citations · Full text

Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations

Ramu Anandakrishnan, Robin Varghese, Nicholas A. Kinney et al. · PLoS Computational Biology · 2019 · 78 citations · Full text

Genetic Mutations, Individual Instances, Somatic Mutations +14