Concepedia

Molecular Mechanisms for CFIm-Mediated Regulation of mRNA Alternative Polyadenylation

Yong Zhu, Xiuye Wang, Elmira Forouzmand, Joshua Jeong, Feng Qiao, Gregory A. Sowd, Alan Engelman, Xiaohui Xie, Klemens J. Hertel, Yongsheng Shi

Molecular Cell · 2017 · 235 citations · 37 references

DOIFull text

Open access

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References

37

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

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BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

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deepTools2: a next generation web server for deep-sequencing data analysis

Fidel Ramírez, Devon Ryan, Björn Grüning et al. · Nucleic Acids Research · 2016 · 9K citations · Full text

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