Anticancer Research · 2017 · 39 citations · 18 references
MedicineCancer BiologyOncologyMolecular OncologyTumor MicroenvironmentTumor ProgressionCancer ProgressionColorectal CancerGastrointestinal Stromal TumorsNext-generation Sequencing In OncologyStromal Cell InteractionsTumor-stroma InteractionsAngiogenesis In XenograftsCell Line-derived Xenograft ModelsCell-cycle Re-entryRodent Tumor ModelsStromal Cell PlasticityTumor Microenvironment CharacterizationTumor Microenvironment Remodeling Over TimeTumor Response Evaluation
BACKGROUND/AIM: Patient-derived xenografting (PDX) of human colorectal cancer (CRC) is the preferred experimental model to study tumor response to therapeutic agents. Gradually, human stromal cells are replaced by mouse stromal cells; however, the exact timing of the replacement of human with murine stromal cells in human CRC xenograft has not been fully elucidated. We hypothesize that orthologous murine transcripts functionally substitutes for the loss due to replacement of human stromal genes. MATERIALS AND METHODS: Human CRC were implanted in athymic nude mice in replicates and followed-up over time. Using next-generation sequencing, we determined the temporal kinetics of human stromal cell replacement with the orthologous murine transcripts. RESULTS: CRC cell-induced re-organization of the normal, quiescent murine stromal cells into a protumorigenic phenotype supporting human CRC growth occurs at initial implantation. CONCLUSION: Murine cell replacement occurs in a time- and size-dependent manner.
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STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
Inferring tumour purity and stromal and immune cell admixture from expression data
Kosuke Yoshihara, Maria Shahmoradgoli, Emmanuel Martínez et al. · Nature Communications · 2013 · 10.7K citations · Full text