BMC Plant Biology · 2017 · 437 citations · 44 references
44
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 66.2K citations · Full text
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 64.7K citations · Full text
BLAST+: architecture and applications
Christiam Camacho, George Coulouris, Vahram Avagyan et al. · BMC Bioinformatics · 2009 · 21.8K citations · Full text
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price, Paramvir Dehal, Adam P. Arkin · PLoS ONE · 2010 · 15.1K citations · Full text