Concepedia

Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development

Douglas H. Phanstiel, Kevin Van Bortle, Damek V. Spacek, Gaelen T. Hess, Muhammad S. Shamim, Ido Machol, Michael I. Love, Erez Lieberman Aiden, Michael C. Bassik, M Snyder

Molecular Cell · 2017 · 353 citations · 64 references

DOIFull text

Open access

Concepts

References

64

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

, , +15

Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text

, , +12

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

, , +14

limma powers differential expression analyses for RNA-sequencing and microarray studies

Matthew E. Ritchie, Belinda Phipson, Di Wu et al. · Nucleic Acids Research · 2015 · 43K citations · Full text

, , +17

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

, , +14