Genome biology · 2017 · 354 citations · 61 references
Life SciencesBiochemistryMicrobiologyMetabolic PhysiologyMetabolomicsMicrobiome ResearchGut MicrobiomeGut MicrobiotaMetabolic SyndromeMetabolite ProfilingMicrobial Community ProfilingMicrobiome FunctionCo-occurrence Network AnalysisGut Microbiota CompositionMetabolic Disease BiomarkersMicrobial Co-occurrence AnalysisMicrobial Community StructureMicrobial MetabolitesMicrobiome-associated MetabolitesMicrobiota Relationships
BACKGROUND: The gut microbiome is a complex and metabolically active community that directly influences host phenotypes. In this study, we profile gut microbiota using 16S rRNA gene sequencing in 531 well-phenotyped Finnish men from the Metabolic Syndrome In Men (METSIM) study. RESULTS: We investigate gut microbiota relationships with a variety of factors that have an impact on the development of metabolic and cardiovascular traits. We identify novel associations between gut microbiota and fasting serum levels of a number of metabolites, including fatty acids, amino acids, lipids, and glucose. In particular, we detect associations with fasting plasma trimethylamine N-oxide (TMAO) levels, a gut microbiota-dependent metabolite associated with coronary artery disease and stroke. We further investigate the gut microbiota composition and microbiota-metabolite relationships in subjects with different body mass index and individuals with normal or altered oral glucose tolerance. Finally, we perform microbiota co-occurrence network analysis, which shows that certain metabolites strongly correlate with microbial community structure and that some of these correlations are specific for the pre-diabetic state. CONCLUSIONS: Our study identifies novel relationships between the composition of the gut microbiota and circulating metabolites and provides a resource for future studies to understand host-gut microbiota relationships.
61
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder, Steve Horvath · BMC Bioinformatics · 2008 · 29.1K citations · Full text
An obesity-associated gut microbiome with increased capacity for energy harvest
Peter J. Turnbaugh, Ruth E. Ley, Michael A. Mahowald et al. · Nature · 2006 · 12.4K citations
Diet rapidly and reproducibly alters the human gut microbiome
Lawrence A. David, Corinne F. Maurice, Rachel N. Carmody et al. · Nature · 2013 · 10.2K citations · Full text
Enterotypes of the human gut microbiome
Manimozhiyan Arumugam, Jeroen Raes, Éric Pelletier et al. · Nature · 2011 · 7.6K citations · Full text
A metagenome-wide association study of gut microbiota in type 2 diabetes
Junjie Qin, Yingrui Li, Zhiming Cai et al. · Nature · 2012 · 7K citations · Full text