Concepedia

Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species

Perla Hamon, Corrinne E. Grover, Aaron P. Davis, Jean-Jacques Rakotomalala, Nathalie Raharimalala, Victor A. Albert, H. L. Sreenath, Piet Stoffelen, Sharon E. Mitchell, Emmanuel Couturon,

Molecular Phylogenetics and Evolution · 2017 · 91 citations · 65 references

DOI

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References

65

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text

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Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist, Maxim Teslenko, Paul van der Mark et al. · Systematic Biology · 2012 · 28K citations · Full text

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New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

Stéphane Guindon, Jean-François Dufayard, Vincent Lefort et al. · Systematic Biology · 2010 · 19K citations · Full text

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