bioRxiv (Cold Spring Harbor Laboratory) · 2017 · 810 citations · 23 references
MedicineCancer BiologyPathologyBiomedical ImagingCellular PathologyCytopathologyBiomarkers In PathologyComputer-aided DiagnosisImage QuantificationMedical Image AnalysisMedical ImagingTumor ImagingBiomedical ApplicationsComputational PathologyDigital Pathology AnalysisHistopathological Image AnalysisHistopathology Image AnalysisImage-based Tumor DetectionOpen-source Software DevelopmentPathology Image Analysis
Abstract QuPath is new bioimage analysis software designed to meet the growing need for a user-friendly, extensible, open-source solution for digital pathology and whole slide image analysis. In addition to offering a comprehensive panel of tumor identification and high-throughput biomarker evaluation tools, QuPath provides researchers with powerful batch-processing and scripting functionality, and an extensible platform with which to develop and share new algorithms to analyze complex tissue images. Furthermore, QuPath’s flexible design makes it suitable for a wide range of additional image analysis applications across biomedical research.
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