Fiji: an open-source platform for biological-image analysis

Johannes Schindelin, Ignacio Arganda‐Carreras, Erwin Frise, +13

Nature Methods

BiologyBiological-image AnalysisImage AnalysisEngineeringMicroscope Image Processing +6

CellProfiler: image analysis software for identifying and quantifying cell phenotypes

Anne E. Carpenter, Thouis R. Jones, Michael R. Lamprecht, +8

Genome biology

Computer Control of Microscopes Using µManager

Arthur Edelstein, Nenad Amodaj, Karl Hoover, +2

Current Protocols in Molecular Biology

Icy: an open bioimage informatics platform for extended reproducible research

Fabrice de Chaumont, Stéphane Dallongeville, Nicolas Chenouard, +8

Nature Methods

Systems BiologyEngineeringBioinformatics DatabaseData ScienceBioimage Analysis +9

Metadata matters: access to image data in the real world

Melissa Linkert, Curtis Rueden, Chris Allan, +13

The Journal of Cell Biology

EngineeringMicroscopyData RepositoryMolecular BiologyImage Database +21

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

Lee Kamentsky, Thouis R. Jones, Adam Fraser, +7

Bioinformatics

CellProfiler™: Free, Versatile Software for Automated Biological Image Analysis

Michael R. Lamprecht, David M. Sabatini, Anne E. Carpenter

BioTechniques

KNIME Workflow to Assess PAINS Filters in SMARTS Format. Comparison of RDKit and Indigo Cheminformatics Libraries

Simon Saubern, Rajarshi Guha, Jonathan B. Baell

Molecular Informatics

Extending KNIME for next-generation sequencing data analysis

Bernd Jagla, Bernd Wiswedel, Jean‐Yves Coppée

Bioinformatics

Knime4Bio: a set of custom nodes for the interpretation of next-generation sequencing data with KNIME

Pierre Lindenbaum, Solena Le Scouarnec, Vincent Portero, +1

Bioinformatics