Molecular Ecology · 2016 · 202 citations · 84 references
Life SciencesEcologySoil SciencesMicrobial EcologySoil MicrobiologyTerrestrial EcologyRhizosphere EcologyRhizosphere ProcessesRoot MicrobiomeSoil Microbial BiomassSoil Microbial PhysiologySoil Nutrient CyclingMicrobial Ecosystem FunctioningMicrobial Soil EcologySoil Carbon StocksSoil Microbial ImpactsSoil Microbial ProcessesSoil Microbial ResponsesSoil MicrobiomesSoil Organic Carbon Mineralization
The impact of climate change on the soil microbiome potentially alters the biogeochemical cycle of terrestrial ecosystems. In semi-arid environments, water availability is a major constraint on biogeochemical cycles due to the combination of high summer temperatures and low rainfall. Here, we explored how 10 years of irrigation of a water-limited pine forest in the central European Alps altered the soil microbiome and associated ecosystem functioning. A decade of irrigation stimulated tree growth, resulting in higher crown cover, larger yearly increments of tree biomass, increased litter fall and greater root biomass. Greater amounts of plant-derived inputs associated with increased primary production in the irrigated forest stands stimulated soil microbial activity coupled with pronounced shifts in the microbiome from largely oligotrophic to more copiotrophic lifestyles. Microbial groups benefitting from increased resource availabilities (litter, rhizodeposits) thrived under irrigation, leading to enhanced soil organic matter mineralization and carbon respired from irrigated soils. This unique long-term study provides new insights into the impact of precipitation changes on the soil microbiome and associated ecosystem functioning in a water-limited pine forest ecosystem and improves our understanding of the persistency of long-term soil carbon stocks in a changing climate.
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R: A Language and Environment for Statistical Computing
R Core Team · 2000 · 353K citations · Full text
Natural Sciences, Computer Science, Statistical Computing +10
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text
Patrick D. Schloss, Sarah L. Westcott, Thomas Ryabin et al. · Applied and Environmental Microbiology · 2009 · 21.8K citations · Full text
TOWARD AN ECOLOGICAL CLASSIFICATION OF SOIL BACTERIA
Noah Fierer, Mark A. Bradford, Robert B. Jackson · Ecology · 2007 · 5K citations