PRODIGY: a web server for predicting the binding affinity of protein–protein complexes - Concepedia

Concepedia

Publication | Open Access

PRODIGY: a web server for predicting the binding affinity of protein–protein complexes

DOI Full Paper Access

1.3K

Citations

16

References

2016

Year

Li C. Xue, João Rodrigues, Panagiotis L. Kastritis, Alexandre M. J. J. Bonvin, Anna Vangone

Abstract

PRODIGY is freely available at: http://milou.science.uu.nl/services/PRODIGY CONTACT: a.m.j.j.bonvin@uu.nl, a.vangone@uu.nl.

References

	Year	Citations
Principles of protein–protein recognition Cyrus Chothia, Joël Janin Nature Protein–protein RecognitionBiochemistryNatural SciencesProtein AnalysisMolecular Biology	1975	1K
PIC: Protein Interactions Calculator Kirubakaran G. Tina, R K Bhadra Nucleic Acids Research	2007	890
Contacts-based prediction of binding affinity in protein–protein complexes Anna Vangone, Alexandre M. J. J. Bonvin eLife	2015	636
FreeSASA: An open source C library for solvent accessible surface area calculations Simon Mitternacht F1000Research	2016	523
Calculation of the free energy of association for protein complexes Nancy C. Horton, Mitchell Lewis Protein Science	1992	330
A structure‐based benchmark for protein–protein binding affinity Panagiotis L. Kastritis, Iain H. Moal, Howook Hwang, Protein Science Protein–protein Binding AffinityProtein-protein ComplexesUnbound ComponentsProtein AssemblyProtein Folding	2011	318
COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes Anna Vangone, Raffaele Spinelli, Vittorio Scarano, Bioinformatics	2011	269
Are Scoring Functions in Protein−Protein Docking Ready To Predict Interactomes? Clues from a Novel Binding Affinity Benchmark Panagiotis L. Kastritis, Alexandre M. J. J. Bonvin Journal of Proteome Research Molecular BiologyProtein−protein Docking ReadyPredict InteractomesProtein FoldingScoring Function	2010	248
ProtorP: a protein–protein interaction analysis server Christopher R. Reynolds, David Damerell, Susan R. Jones Bioinformatics	2008	182
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces Nurcan Tunçbağ, Guruprasad Kar, Özlem Keskin, Briefings in Bioinformatics Unanimous AgreementAvailable ToolsMolecular BiologyProtein FoldingProteomics	2008	157

Page 1