Clinical Infectious Diseases · 2016 · 31 citations · 11 references
Veterinary MedicineInfectious DiseasesMicrobiologyAntimicrobial ResistanceMedical MicrobiologyMolecular EpidemiologyAntibiotic ResistanceAntimicrobial Susceptibility TestingDrug ResistanceMolecular Epidemiology Of ResistanceResistance EpidemiologyResistance GenesDrug Resistance PatternsDrug Resistance TestingMolecular Drug ResistanceMolecular Drug Susceptibility TestingPrimary Resistance FormRifampicin Resistance TestingRifampicin TherapyTuberculosis Drug Resistance
Molecular drug susceptibility testing was performed on skin biopsies from 24 leprosy patients from Guinea-Conakry for the first time. We identified primary drug resistance in 4 cases and a dapsone-resistant cluster caused by the same strain. Primary transmission of drug-resistant Mycobacterium leprae, including a rifampicin-resistant strain, is reported.
11
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
Daniel C. Koboldt, Qunyuan Zhang, David E. Larson et al. · Genome Research · 2012 · 5.3K citations · Full text
Comparative genomic and phylogeographic analysis of Mycobacterium leprae
Marc Monot, Nadine Honoré, Thierry Garnier et al. · Nature Genetics · 2009 · 394 citations · Full text
Genome-Wide Comparison of Medieval and Modern <i>Mycobacterium leprae</i>
Verena J. Schuenemann, Pushpendra Singh, Thomas A. Mendum et al. · Science · 2013 · 357 citations · Full text