Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin

Bioinformatics

PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

Shaun Purcell, Benjamin M. Neale, Katherine EO Todd-Brown, +8

The American Journal of Human Genetics

Genome-wide Association StudyWhole-genome AssociationLinkage DisequilibriumGenotype-phenotype AssociationPopulation-based Linkage Analyses +10

Second-generation PLINK: rising to the challenge of larger and richer datasets

Christopher Chang, Carson C. Chow, Laurent CAM Tellier, +3

GigaScience

Fast model-based estimation of ancestry in unrelated individuals

David H. Alexander, John Novembre, Kenneth Lange

Genome Research

Population Structure and Eigenanalysis

Nick Patterson, Alkes L. Price, David Reich

PLoS Genetics

A Draft Sequence of the Neandertal Genome

Richard E. Green, Johannes Krause, Adrian W. Briggs, +52

Science

GeneticsGenomicsNeandertal GenomeClosest Evolutionary RelativesPhylogenetics +16

ANGSD: Analysis of Next Generation Sequencing Data

Thorfinn Sand Korneliussen, Anders Albrechtsen, Rasmus Nielsen

BMC Bioinformatics

Ancient Admixture in Human History

Nick Patterson, Priya Moorjani, Yontao Luo, +6

Genetics

Population MixtureGeneticsArchaeologyHuman PhenotypesMolecular Ecology +18

The complete genome sequence of a Neanderthal from the Altai Mountains

Kay Prüfer, Fernando Racimo, Nick Patterson, +41

Nature

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

Matthias Meyer, Martin Kircher, Marie-Theres Gansauge, +30

Science

GeneticsGenomicsHigh FrequencyExtinct RelativeGenome Sequence +17