Journal of Clinical Neurology · 2016 · 65 citations · 10 references
Life SciencesInfectious DiseasesMicrobiologyDiagnostic MicrobiologyFood MicrobiologyMedical MicrobiologyInfectious Disease DetectionPathogen Sequence AnalysisCerebrospinal Fluid DiagnosisCerebrospinal Fluid SystemClinical Microbiology DiagnosticsClinical Next-generation SequencingEarly DiagnosisListeria DetectionListeria Monocytogenes Contamination
BACKGROUND AND PURPOSE: Encephalitis caused by Listeria monocytogenes (L. monocytogenes) is rare but sometimes fatal. Early diagnosis is difficult using routine cerebrospinal fluid (CSF) tests, while next-generation sequencing (NGS) is increasingly being used for the detection and characterization of pathogens. METHODS: This study set up and applied unbiased NGS to detect L. monocytogenes in CSF collected from three cases of clinically suspected listeria meningoencephalitis. RESULTS: Three cases of patients with acute/subacute meningoencephalitis are reported. Magnetic resonance imaging and blood cultures led to a suspected diagnosis of L. monocytogenes, while the CSF cultures were negative. Unbiased NGS of CSF identified and sequenced reads corresponding to L. monocytogenes in all three cases. CONCLUSIONS: This is the first report highlighting the feasibility of applying NGS of CSF as a diagnostic method for central nervous system (CNS) L. monocytogenes infection. Routine application of this technology in clinical microbiology will significantly improve diagnostic methods for CNS infectious diseases.
10
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever in Central Africa
Gilda Grard, Joseph N. Fair, Deanna Lee et al. · PLoS Pathogens · 2012 · 214 citations · Full text