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Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax

Daniel Hupalo, Zunping Luo, Alexandre Melnikov, Patrick L Sutton, Peter Rogov, Ananías A. Escalante, Andrés F. Vallejo, Sócrates Herrera, Myriam Arévalo‐Herrera, Qi Fan,

Nature Genetics · 2016 · 234 citations · 48 references

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48

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text

, , +12

MUSCLE: multiple sequence alignment with high accuracy and high throughput

R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text

, , +13

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 34.3K citations · Full text

, , +12

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna, Matthew G. Hanna, Eric Banks et al. · Genome Research · 2010 · 30K citations · Full text

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