Heredity · 2015 · 144 citations · 37 references
Life SciencesBiologyGeneticsCytogeneticsReproductive BiologyReproductive GeneticsChromosome BiologyGene MappingGenetic MappingSex DeterminationSex DifferentiationSexual DimorphismChromosomal Sex DeterminationGenetic Linkage MapsHigh-density Genetic MapsHigh-density Linkage MapsSex Chromosome LinkageSex Chromosome OrganizationSex Chromosome Structure
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast gapped-read alignment with Bowtie 2
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The variant call format and VCFtools
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Stacks: an analysis tool set for population genomics
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