Stacks: an analysis tool set for population genomics

Julian Catchen, Paul A. Hohenlohe, Susan Bassham, +2

Molecular Ecology

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

Paul A. Hohenlohe, Susan Bassham, Paul D. Etter, +3

PLoS Genetics

SNP Discovery and Genotyping for Evolutionary Genetics Using RAD Sequencing

Paul D. Etter, Susan Bassham, Paul A. Hohenlohe, +2

Methods in molecular biology

Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes

Paul A. Hohenlohe, Susan Bassham, Mark Currey, +1

Philosophical Transactions of the Royal Society B Biological Sciences

Extensive Linkage DisequilibriumComparative GenomicsGeneticsMolecular GeneticsGenomics +18

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads

Paul D. Etter, Jessica Preston, Susan Bassham, +2

PLoS ONE

GeneticsMolecular BiologyMolecular GeneticsGenomicsHigh Throughput Sequencing +15

Evolution of stickleback in 50 years on earthquake-uplifted islands

Emily Lescak, Susan Bassham, Julian Catchen, +4

Proceedings of the National Academy of Sciences

Molecular Evolutionary EcologyEngineeringPrince William SoundGeneticsNatural Selection +16

The population structure and recent colonization history of<scp>O</scp>regon threespine stickleback determined using restriction‐site associated<scp>DNA</scp>‐sequencing

Julian Catchen, Susan Bassham, Taylor Wilson, +4

Molecular Ecology

Recent Colonization HistoryMolecular Evolutionary EcologyGeneticsMolecular GeneticsGenomics +16

Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain

Cristian Cañestro, Susan Bassham, John H. Postlethwait

Developmental Biology

BiologyMorphological EvidenceLarvacean Oikopleura DioicaBrain MechanismNeuroanatomy +10

The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica

Susan Bassham, John H. Postlethwait

Development

The genome of the Gulf pipefish enables understanding of evolutionary innovations

Clayton M. Small, Susan Bassham, Julian Catchen, +5

Genome biology