Quality Control of RNA-Seq Experiments

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.1K citations

Developmental Biology, Functional Genomics, Rna Biology +10

Mapping and quantifying mammalian transcriptomes by RNA-Seq

A Mortazavi, Brian A. Williams, Kenneth McCue et al. · Nature Methods · 2008 · 14K citations

Functional Genomics, Genetics, Transcriptomics Technology +7

Base-Calling of Automated Sequencer Traces Using<i>Phred.</i> I. Accuracy Assessment

Brent Ewing, LaDeana Hillier, Michael C. Wendl et al. · Genome Research · 1998 · 7K citations · Full text

Base-Calling of Automated Sequencer Traces Using <i>Phred.</i> II. Error Probabilities

Brent Ewing, Phil Green · Genome Research · 1998 · 5.5K citations · Full text

Engineering, Genetics, Molecular Genetics +22

Alternative isoform regulation in human tissue transcriptomes

Eric T. Wang, Rickard Sandberg, Shujun Luo et al. · Nature · 2008 · 5.2K citations · Full text

Gene Regulation, Systems Biology, Medicine +4