PLoS ONE · 2016 · 670 citations · 29 references
Life SciencesGeneticsMolecular GeneticsCancer GeneticsGenomicsHuman GeneticsCancer GenomicsGenetic Risk AssessmentGermline Cancer PredispositionGermline Cancer SusceptibilityHereditary Cancer SyndromesCancer Risk AssociationFamilial Breast CancerFamilial Cancer RiskFounder MutationsGenetic Predisposition To CancerGenetic Risk VariantsHereditary Cancer RiskRisk Gene Variants
Common variation on 14q24.1, close to RAD51B, has been associated with breast cancer: rs999737 and rs2588809 with the risk of female breast cancer and rs1314913 with the risk of male breast cancer. The aim of this study was to investigate the role of RAD51B variants in breast cancer predisposition, particularly in the context of familial breast cancer in Finland. We sequenced the coding region of RAD51B in 168 Finnish breast cancer patients from the Helsinki region for identification of possible recurrent founder mutations. In addition, we studied the known rs999737, rs2588809, and rs1314913 SNPs and RAD51B haplotypes in 44,791 breast cancer cases and 43,583 controls from 40 studies participating in the Breast Cancer Association Consortium (BCAC) that were genotyped on a custom chip (iCOGS). We identified one putatively pathogenic missense mutation c.541C>T among the Finnish cancer patients and subsequently genotyped the mutation in additional breast cancer cases (n = 5259) and population controls (n = 3586) from Finland and Belarus. No significant association with breast cancer risk was seen in the meta-analysis of the Finnish datasets or in the large BCAC dataset. The association with previously identified risk variants rs999737, rs2588809, and rs1314913 was replicated among all breast cancer cases and also among familial cases in the BCAC dataset. The most significant association was observed for the haplotype carrying the risk-alleles of all the three SNPs both among all cases (odds ratio (OR): 1.15, 95% confidence interval (CI): 1.11-1.19, P = 8.88 x 10-16) and among familial cases (OR: 1.24, 95% CI: 1.16-1.32, P = 6.19 x 10-11), compared to the haplotype with the respective protective alleles. Our results suggest that loss-of-function mutations in RAD51B are rare, but common variation at the RAD51B region is significantly associated with familial breast cancer risk.
29
Ahmedin Jemal, Freddie Bray, Jacques Ferlay et al. · CA A Cancer Journal for Clinicians · 2011 · 55K citations · Full text
Global cancer statistics, 2012
Lindsey A. Torre, Freddie Bray, Rebecca L. Siegel et al. · CA A Cancer Journal for Clinicians · 2015 · 27.4K citations · Full text
LocusZoom: regional visualization of genome-wide association scan results
Randall Pruim, Ryan Welch, Serena Sanna et al. · Bioinformatics · 2010 · 3K citations · Full text
Template-based protein structure modeling using the RaptorX web server
Morten Källberg, Haipeng Wang, Sheng Wang et al. · Nature Protocols · 2012 · 1.7K citations · Full text
Burkhard Rost, Guy Yachdav, Jinfeng Liu · Nucleic Acids Research · 2004 · 1.5K citations · Full text