The Journal of Physical Chemistry B · 2014 · 50 citations · 52 references
Natural SciencesBiophysicsPhysicsCondensed Matter PhysicsSpectroscopyStructural BiophysicsBiophysical SpectroscopyElectronic SpectroscopyMolecular DynamicsOptical SpectroscopyPhotosynthetic PigmentsSpectroscopy SimulationDisorderDisorder ParameterDynamic DisorderDynamic Disorder ModelingExcitonic EffectsSpectral Line ShapesTemperature Effects On SpectraTwo-dimensional Electronic Spectroscopy
Two-dimensional coherent electronic spectroscopy (2DES) is a powerful technique in distinguishing homogeneous and inhomogeneous broadening contributions to the spectral line shapes of molecular transitions induced by environment fluctuations. Using an excitonic model of a double-ring LH2 aggregate, we perform simulations of its 2DES spectra and find that the model of a harmonic environment cannot provide a consistent set of parameters for two temperatures: 77 K and room temperature. This indicates the highly anharmonic nature of protein fluctuations for the pigments of the B850 ring. However, the fluctuations of B800 ring pigments can be assumed as harmonic in this temperature range.
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VMD: Visual molecular dynamics
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Crystal structure of an integral membrane light-harvesting complex from photosynthetic bacteria
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The crystal structure of the light-harvesting complex II (B800–850) from Rhodospirillum molischianum
Juergen Koepke, Xiche Hu, Cornelia Muenke et al. · Structure · 1996 · 1K citations · Full text
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