Chemical Communications · 2016 · 61 citations · 46 references
Natural SciencesBioinformaticsChemistryComputational ChemistryQuantum MechanicsStructural BioinformaticsMolecular DockingProtein DockingProtein-ligand DockingSmall-molecule ScreeningSolvation ModelingVirtual ScreeningBinding Pose AnalysisBinding Pose PredictionLigand Pose PredictionPose PredictionProtein-ligand Binding Pose PredictionScoring FunctionsVirtual Screening FiltersVirtual Screening Scoring
Current virtual screening tools are fast, but reliable scoring is elusive. Here, we present the 'SQM/COSMO filter', a novel scoring function featuring a quantitative semiempirical quantum mechanical (SQM) description of all types of noncovalent interactions coupled with implicit COSMO solvation. We show unequivocally that it outperforms eight widely used scoring functions. The accuracy and chemical generality of the SQM/COSMO filter make it a perfect tool for late stages of virtual screening.
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Development and testing of a general amber force field
Junmei Wang, Romain M. Wolf, James W. Caldwell et al. · Journal of Computational Chemistry · 2004 · 19.6K citations