Physical review. E · 2016 · 15 citations · 35 references
Natural SciencesBiophysicsChemistryComputational BiophysicsComputational ChemistryTheoretical ChemistryComputational Molecular BiophysicsMacromolecular StructureMolecular DynamicsMolecular MechanicsMolecular ModelingMolecular SimulationAdaptive ResolutionAdaptive Resolution SimulationChainsComputational Molecular ModelingMolecular Simulation Algorithms
We extend the application of the adaptive resolution technique (AdResS) to liquid systems composed of alkane chains of different lengths. The aim of the study is to develop and test the modifications of AdResS required in order to handle the change of representation of large molecules. The robustness of the approach is shown by calculating several relevant structural properties and comparing them with the results of full atomistic simulations. The extended scheme represents a robust prototype for the simulation of macromolecular systems of interest in several fields, from material science to biophysics.
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How Does a Drug Molecule Find Its Target Binding Site?
Yibing Shan, Eric T. Kim, Michael P. Eastwood et al. · Journal of the American Chemical Society · 2011 · 650 citations
Medicine, Biophysics, Pharmacology +17