Concepedia

Using in situ bacterial communities to monitor contaminants in river sediments

Yuwei Xie, Ji‐Zhong Wang, Yaketon Wu, Ren Chen, Chao Song, Jianghua Yang, Hongxia Yu, John P. Giesy, Xiaowei Zhang

Environmental Pollution · 2016 · 120 citations · 47 references

DOI

Concepts

References

47

Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

Qiong Wang, George M Garrity, James M. Tiedje et al. · Applied and Environmental Microbiology · 2007 · 20.5K citations · Full text

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UPARSE: highly accurate OTU sequences from microbial amplicon reads

R. C. Edgar · Nature Methods · 2013 · 17.3K citations

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Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

Todd Z. DeSantis, Philip Hugenholtz, N. Larsen et al. · Applied and Environmental Microbiology · 2006 · 11.2K citations · Full text

, , +17

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

Anna Klindworth, Elmar Pruesse, Timmy Schweer et al. · Nucleic Acids Research · 2012 · 9K citations · Full text

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UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

Catherine Lozupone, Rob Knight · Applied and Environmental Microbiology · 2005 · 8.6K citations · Full text

, , +16