Amplicon Indel Hunter Is a Novel Bioinformatics Tool to Detect Large Somatic Insertion/Deletion Mutations in Amplicon-Based Next-Generation Sequencing Data

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

Heng Li · arXiv (Cornell University) · 2014 · 5.8K citations · Full text

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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

Kai Ye, Marcel H. Schulz, Quan Long et al. · Bioinformatics · 2009 · 2.2K citations · Full text

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BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

Ken Chen, John W. Wallis, Michael D. McLellan et al. · Nature Methods · 2009 · 1.6K citations

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The presence of a FLT3 internal tandem duplication in patients with acute myeloid leukemia (AML) adds important prognostic information to cytogenetic risk group and response to the first cycle of chemotherapy: analysis of 854 patients from the United Kingdom Medical Research Council AML 10 and 12 trials

Panagiotis Kottaridis, Rosemary E. Gale, Marion E. Frew et al. · Blood · 2001 · 1.5K citations · Full text

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