Concepedia

Indel Detection

Indel Detection is a computational method in variant detection that specifically identifies insertions and deletions of nucleotides in genomic sequences relative to a reference genome.

201

Publications

26K

Citations

1.5K

Authors

506

Institutions

Publications per year

2017–2026

77

Parents

Publications

201

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

Yang Liao, Gordon K. Smyth, Wei Shi · Nucleic Acids Research · 2013 · 3.4K citations · Full text

, , +17

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

Kai Ye, Marcel H. Schulz, Quan Long et al. · Bioinformatics · 2009 · 2.2K citations · Full text

, , +17

Scaling accurate genetic variant discovery to tens of thousands of samples

Ryan Poplin, Valentín Ruano-Rubio, Mark A. DePristo et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2017 · 2.1K citations · Full text

, , +17

A universal SNP and small-indel variant caller using deep neural networks

Ryan Poplin, Pi-Chuan Chang, David H. Alexander et al. · Nature Biotechnology · 2018 · 1.9K citations

, , +14

Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs

Christopher T. Saunders, Wendy S.W. Wong, Sajani Swamy et al. · Bioinformatics · 2012 · 1.8K citations · Full text

, , +17

1–5 of 201

Authors

1.5K

  1. MC
    Michael C. Schatz

    Johns Hopkins University, United States

    6 publications · 1.2K citations

    6

    h-index

  2. GN
    Giuseppe Narzisi

    New York Genome Center, United States

    4 publications · 693 citations

    4

    h-index

  3. LZ
    Liqing Zhang

    Virginia Tech, United States

    4 publications · 147 citations

    4

    h-index

  4. JM
    Justin M. Zook

    National Institute of Standards and Technology, United States

    4 publications · 1.5K citations

    4

    h-index

  5. EB
    Eric Bennett

    University of Copenhagen, Denmark

    4 publications · 432 citations

    4

    h-index

1–5 of 1.5K

Institutions

506

  1. Broad Institute

    Cambridge, United States

    10 h-index

    45 publications

    47.5K citations

  2. University of Washington

    Seattle, United States

    9 h-index

    69 publications

    14.9K citations

  3. Stanford University

    Stanford, United States

    9 h-index

    35 publications

    2.1K citations

  4. Harvard University

    Cambridge, United States

    9 h-index

    32 publications

    11.7K citations

  5. University of Copenhagen

    Copenhagen, Denmark

    7 h-index

    44 publications

    5.5K citations

  6. Wellcome Sanger Institute

    Cambridge, United Kingdom

    6 h-index

    19 publications

    13.3K citations

  7. Johns Hopkins University

    Baltimore, United States

    6 h-index

    13 publications

    2.5K citations

  8. Howard Hughes Medical Institute

    Chevy Chase, United States

    6 h-index

    6 publications

    1.4K citations

1–8 of 506

Venues

  1. BMC Genomics

    19 publications · 1K citations

    15

    h-index

  2. Bioinformatics

    15 publications · 4.9K citations

    14

    h-index

  3. PLoS ONE

    14 publications · 705 citations

    13

    h-index

  4. Nucleic Acids Research

    13 publications · 4.2K citations

    12

    h-index

  5. Scientific Reports

    10 publications · 775 citations

    10

    h-index

1–5