Exploring New Search Algorithms and Hardware for Phylogenetics: RAxML Meets the IBM Cell

References

Page 1

	Year	Citations
MrBayes 3: Bayesian phylogenetic inference under mixed models Fredrik Ronquist, John P. Huelsenbeck Bioinformatics BiologyPhylogeneticsMolecular EcologyNatural SciencesGenetics	2003	29.1K
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood Stéphane Guindon, Olivier Gascuel Systematic Biology	2003	16.8K
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models Alexandros Stamatakis Bioinformatics	2006	15.7K
Evolutionary trees from DNA sequences: A maximum likelihood approach Joseph Felsenstein Journal of Molecular Evolution PhylogeneticsMolecular EcologyMedicineGeneticsEvolutionary Biology	1981	14.7K
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB Todd Z. DeSantis, Philip Hugenholtz, N. Larsen, Applied and Environmental Microbiology	2006	11K
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees Alexandros Stamatakis, Thomas Ludwig, Harald Meier Bioinformatics	2004	1.5K
The design and implementation of a first-generation CELL processor D. Pham, S. Asano, M. Bolliger, EngineeringVlsi DesignPower Architecture ProcessorComputer ArchitectureProcessor Architecture	2005	546
Unexpected Diversity and Complexity of the Guerrero Negro Hypersaline Microbial Mat Ruth E. Ley, J. Kirk Harris, Joshua Wilcox, Applied and Environmental Microbiology	2006	473
Memory---Sequoia Kayvon Fatahalian, William J. Dally, Pat Hanrahan, Cluster ComputingMassively-parallel ComputingEngineeringParallel SoftwareProgram Analysis	2006	462
Phylogenetic models of rate heterogeneity: a high performance computing perspective Alexandros Stamatakis Comparative GenomicsGeneticsTaxonomyDna SequencesGenomics	2006	288

Page 1