Computer applications in the biosciences · 1992 · 2.4K citations · 16 references
Life SciencesBioinformaticsMolecular EvolutionPhylogeneticsSequence AnalysisMolecular PhylogenyPhylogenetic Tree ReconstructionSequence AlignmentSequence Similarity SearchTree Topology ComparisonCompiler DesignCompiler SupportMultiple Sequence AlignmentMultiple Sequence Alignment FeaturesRooting Of Phylogenetic Trees
The CLUSTAL package of multiple sequence alignment programs has been completely rewritten and many new features added. The new software is a single program called CLUSTAL V, which is written in C and can be used on any machine with a standard C compiler. The main new features are the ability to store and reuse old alignments and the ability to calculate phylogenetic trees after alignment. The program is simple to use, completely menu driven and on-line help is provided.
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CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
Joseph Felsenstein · Evolution · 1985 · 41.5K citations · Full text
A comprehensive set of sequence analysis programs for the VAX
John Devereux, Paul Haeberli, Oliver Smithies · Nucleic Acids Research · 1984 · 14.4K citations · Full text
Multiple sequence alignment with hierarchical clustering
F. Corpet · Nucleic Acids Research · 1988 · 5.4K citations · Full text