Concepedia

Enantioselective Substrate Binding in a Monooxygenase Protein Model by Molecular Dynamics and Docking

K. Anton Feenstra, Karin Hofstetter, Rolien Bosch, Andreas Schmid, Jan N. M. Commandeur, Nico Vermeulen

Biophysical Journal · 2006 · 25 citations · 38 references

Open access

Concepts

Life SciencesBiochemistryMolecular BiologyBiomolecular ModelingEnzyme MechanismEnzymologyEnzyme FunctionEnzyme-substrate RecognitionLigand BindingMolecular DockingProtein-ligand DockingSubstrate BindingEnantioselective Binding OptimizationEnzymatic Reaction MechanismsEnzyme-substrate Interaction ModelingMolecular Docking For EnzymesMonooxygenase CatalysisProtein-ligand Docking In Enzyme DesignSubstrate Binding Specificity

References

38

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations

Life Sciences, Bioinformatics, Sequence Analysis +3

The Protein Data Bank

Helen M. Berman · Nucleic Acids Research · 2000 · 39.8K citations

Life Sciences, Biochemistry, Bioinformatics +10

PROCHECK: a program to check the stereochemical quality of protein structures

Roman A. Laskowski, Malcolm W. MacArthur, D. S. Moss et al. · Journal of Applied Crystallography · 1993 · 24.6K citations

Life Sciences, Biochemistry, Bioinformatics +9

LINCS: A linear constraint solver for molecular simulations

Berk Hess, Henk Bekker, Herman J. C. Berendsen et al. · Journal of Computational Chemistry · 1997 · 17.1K citations

Natural Sciences, Chemistry, Physics +14

Comparative Protein Modelling by Satisfaction of Spatial Restraints

Andrej Šali, Tom L. Blundell · Journal of Molecular Biology · 1993 · 13.2K citations

Life Sciences, Biochemistry, Bioinformatics +11