DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis - Concepedia

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DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis

DOI Full Paper Access

1.3K

Citations

12

References

2014

Year

Guangchuang Yu, Ligen Wang, Guang‐Rong Yan, Qing‐Yu He

Abstract

gcyu@connect.hku.hk or tqyhe@jnu.edu.cn.

References

	Year	Citations
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters Guangchuang Yu, Li-Gen Wang, Yanyan Han, OMICS A Journal of Integrative Biology GeneticsGenomicsGene RecognitionBioinformatics DatabaseR Package	2012	36K
An Information-Theoretic Definition of Similarity Dekang Lin	1998	3.7K
Semantic Similarity in a Taxonomy: An Information-Based Measure and its Application to Problems of Ambiguity in Natural Language Philip Resnik Journal of Artificial Intelligence Research EngineeringSimilarity MeasureSemanticsSemantic WebSemantic Similarity	1999	2.1K
GOSemSim: an R package for measuring semantic similarity among GO terms and gene products Guangchuang Yu, Fei Li, Yide Qin, Bioinformatics	2010	1.4K
A new method to measure the semantic similarity of GO terms James Z. Wang, Zhidian Du, Rapeeporn Payattakool, Bioinformatics	2007	1.4K
Disease Ontology: a backbone for disease semantic integration Lynn M. Schriml, Cesar Arze, Suvarna Nadendla, Nucleic Acids Research Ontology (Information Science)Ontology-based Data IntegrationHealth InformaticsInformation RetrievalData Science	2011	953
Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy Jay J. Jiang, David W. Conrath arXiv (Cornell University)	1997	904
A new measure for functional similarity of gene products based on Gene Ontology Andreas Schlicker, Francisco S. Domingues, Jörg Rahnenführer, BMC Bioinformatics	2006	713
Proceedings of the Fifteenth International Conference on Machine Learning Jude Shavlik Artificial IntelligenceEngineeringMachine LearningComputational Learning TheoryAlgorithmic Learning	1998	460
Annotating the human genome with Disease Ontology John D. Osborne, Jared Flatow, Michelle Holko, BMC Genomics	2009	274

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