Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt, Gwo-Liang Chen, Philip LoCascio, +3

BMC Bioinformatics

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

Todd M. Lowe, Sean R. Eddy

Nucleic Acids Research

Pfam: the protein families database

ROBERT FINN, Alex Bateman, Jody Clements, +10

Nucleic Acids Research

GeneticsMolecular BiologyGenomicsSequence AlignmentBioinformatics Database +14

HMMER web server: interactive sequence similarity searching

ROBERT FINN, Jody Clements, Sean R. Eddy

Nucleic Acids Research

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

Karin Lagesen, Peter F. Hallin, Einar Andreas Rødland, +3

Nucleic Acids Research

EngineeringRibosomal RnaGeneticsGenomicsGene Recognition +16

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

Todd M. Lowe, Sean R. Eddy

Nucleic Acids Research

EngineeringGeneticsMolecular BiologyTranscriptomics TechnologyMolecular Genetics +20

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

Mette Voldby Larsen, Salvatore Cosentino, Simon Rasmussen, +8

Journal of Clinical Microbiology

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

Patricia P. Chan, T. M. Lowe

Nucleic Acids Research

GeneticsGenomicsSequence AlignmentBioinformatics DatabasePhylogenetic Analysis +17

The advantages of SMRT sequencing

Richard J. Roberts, Mauricio O. Carneiro, Michael C. Schatz

Genome biology

Genome Project Standards in a New Era of Sequencing

Patrick Chain, Darren Grafham, Robert S. Fulton, +41

Science

Long-read SequencingSequence AssemblyResearch CommunityFunctional GenomicsSequencing +13