Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt, Gwo-Liang Chen, Philip LoCascio, +3

BMC Bioinformatics

KBase: The United States Department of Energy Systems Biology Knowledgebase

Adam P. Arkin, Robert W. Cottingham, Christopher S. Henry, +78

Nature Biotechnology

Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

Gabrielle Rocap, Frank W. Larimer, Jane E. Lamerdin, +21

Nature

BiologyMicrobial DiversityMolecular EcologyNatural SciencesGenome Divergence +6

Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris

Frank W. Larimer, Patrick Chain, Loren Hauser, +16

Nature Biotechnology

The genome of a motile marine Synechococcus

Brian Palenik, Bianca Brahamsha, Frank W. Larimer, +12

Nature

BiologyMarine GenomicsMolecular EcologyMicrobiologyMedicine +1

Insights into the evolution of <i>Yersinia pestis</i> through whole-genome comparison with <i>Yersinia pseudotuberculosis</i>

Patrick Chain, Élisabeth Carniel, Frank W. Larimer, +20

Proceedings of the National Academy of Sciences

Microbial PathogensGeneticsY. PestisGenomicsBacterial Pathogens +14

Complete Genome Sequence of the Ammonia-Oxidizing Bacterium and Obligate Chemolithoautotroph <i>Nitrosomonas europaea</i>

Patrick Chain, Jane E. Lamerdin, Frank W. Larimer, +12

Journal of Bacteriology

GeneticsMolecular BiologyMicrobial PhysiologyGenomicsRedox Biology +19

Comparison of the complete genome sequences of <i>Pseudomonas syringae</i> pv. <i>syringae</i> B728a and pv. <i>tomato</i> DC3000

Helene Feil, William S. Feil, Patrick Chain, +17

Proceedings of the National Academy of Sciences

Pseudomonas Syringae PvPss B728a GenomePss B728aMedicineGenetics +9

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

Konstantinos Mavromatis, Natalia Ivanova, Kerrie Barry, +12

Nature Methods

Functional GenomicsEngineeringNext-generation SequencingOmics DatasetsComputational Genomics +11

Enigmatic, ultrasmall, uncultivated Archaea

Brett J. Baker, Luis R. Comolli, Gregory J. Dick, +7

Proceedings of the National Academy of Sciences