<i>proovread</i> : large-scale high-accuracy PacBio correction through iterative short read consensus

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 64.7K citations · Full text

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 58.3K citations · Full text

Long-read Sequencing, Sequence Assembly, Natural Sciences +7

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

Chen-Shan Chin, David H. Alexander, Patrick Marks et al. · Nature Methods · 2013 · 4.2K citations

Long-read Sequencing, Sequencing, Next-generation Sequencing +10

Real-Time DNA Sequencing from Single Polymerase Molecules

John Eid, Adrian Fehr, Jeremy Gray et al. · Science · 2008 · 3.7K citations

Dna Analysis, Template Position, Molecular Biology +20

Automated generation of heuristics for biological sequence comparison

Guy Slater, Ewan Birney · BMC Bioinformatics · 2005 · 3K citations · Full text