Bioinformatics · 2011 · 277 citations · 14 references
Life SciencesMolecular BiologyVisualizationProtein-protein InteractionsStructural BioinformaticsStructural BiologyBiomolecular InteractionsBiomolecular InterfacesMacromolecular InteractionsMolecular VisualizationProtein StructureProtein-ligand InteractionsInteraction Interface AnalysisInteraction Interface MappingMacromolecular Structure VisualizationNucleic Acid-protein InterfacesProtein Contact MapsProtein Interface MappingProtein-protein Interface AnalysisProtein-protein Interface Mapping
SUMMARY: Herein we present COCOMAPS, a novel tool for analyzing, visualizing and comparing the interface in protein-protein and protein-nucleic acids complexes. COCOMAPS combines traditional analyses and 3D visualization of the interface with the effectiveness of intermolecular contact maps. AVAILABILITY: COCOMAPS is accessible as a public web tool at http://www.molnac.unisa.it/BioTools/cocomaps CONTACT: romina.oliva@uniparthenope.it; lcavallo@unisa.it.
14
Helen M. Berman · Nucleic Acids Research · 2000 · 39.8K citations
Inference of Macromolecular Assemblies from Crystalline State
Evgeny Krissinel, Kim Henrick · Journal of Molecular Biology · 2007 · 10.4K citations · Full text
Satisfying Hydrogen Bonding Potential in Proteins
Ian K. McDonald, Janet M. Thornton · Journal of Molecular Biology · 1994 · 2.1K citations
PIC: Protein Interactions Calculator
Kirubakaran G. Tina, R K Bhadra · Nucleic Acids Research · 2007 · 894 citations · Full text