A comparison of normalization methods for high densityoligonucleotide array data based on variance and bias

Benjamin M. Bolstad, Rafael A. Irizarry, Magnus Åstrand, +1

Bioinformatics

Human DNA methylomes at base resolution show widespread epigenomic differences

Ryan Lister, Mattia Pelizzola, Robert H. Dowen, +15

Nature

ChromatinHuman Dna MethylomesChromatin RemodelingEpigenetic ChangeGenetics +8

Circular binary segmentation for the analysis of array-based DNA copy number data

Adam B. Olshen, E. S. Venkatraman, R. Lucito, +1

Biostatistics

EngineeringGeneticsDna AnalysisCircular Binary SegmentationGenomics +20

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

Rafael A. Irizarry, Christine Ladd‐Acosta, Bo Wen, +11

Nature Genetics

ChromatinSimilar Hypo-MedicineEpigenetic ChangeDna Methylation +9

Using GOstats to test gene lists for GO term association

Seth Falcon, Robert Gentleman

Bioinformatics

DNA methylation profiling of human chromosomes 6, 20 and 22

Florian Eckhardt, Joern Lewin, Rene Cortese, +23

Nature Genetics

ChromatinEpigenetic ChangeGeneticsDna MethylationEpigenomics +7

BSMAP: whole genome bisulfite sequence MAPping program

Yuanxin Xi, Wei Li

BMC Bioinformatics

Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts

Akiko Doi, In-Hyun Park, Bo Wen, +11

Nature Genetics

Lineage PlasticityInduced Pluripotent Stem CellDevelopmental BiologyPluripotent Stem CellsMedicine +8

Repbase Update: a database and an electronic journal of repetitive elements

Jerzy Jurka

Trends in Genetics

Archival ScienceEngineeringInformation RetrievalData ScienceVery Large Database +12

High-throughput DNA methylation profiling using universal bead arrays

Marina Bibikova, Zhenwu Lin, Lixin Zhou, +14

Genome Research