Nucleic Acids Research · 2014 · 656 citations · 24 references
Life SciencesBioinformaticsBiologyGenomicsProteomicsSystematicsProtein Function AnnotationTaxonomic DatabasesGene Ontology AnnotationOntology AnnotationOntology-based AnnotationProtein AnnotationProtein Reference DatabasesTaxonomic Reference Databases
The Gene Ontology Annotation (GOA) resource (http://www.ebi.ac.uk/GOA) provides evidence-based Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB). Manual annotations provided by UniProt curators are supplemented by manual and automatic annotations from model organism databases and specialist annotation groups. GOA currently supplies 368 million GO annotations to almost 54 million proteins in more than 480,000 taxonomic groups. The resource now provides annotations to five times the number of proteins it did 4 years ago. As a member of the GO Consortium, we adhere to the most up-to-date Consortium-agreed annotation guidelines via the use of quality control checks that ensures that the GOA resource supplies high-quality functional information to proteins from a wide range of species. Annotations from GOA are freely available and are accessible through a powerful web browser as well as a variety of annotation file formats.
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EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
Albert J. Vilella, Jessica Severin, Abel Ureta-Vidal et al. · Genome Research · 2008 · 1.3K citations · Full text
QuickGO: a web-based tool for Gene Ontology searching
David Binns, Emily Dimmer, Rachael P. Huntley et al. · Bioinformatics · 2009 · 1K citations · Full text
The GOA database: Gene Ontology annotation updates for 2015
Rachael P. Huntley, Tony Sawford, Prudence Mutowo et al. · Nucleic Acids Research · 2014 · 656 citations · Full text
The GOA database in 2009--an integrated Gene Ontology Annotation resource
Daniel Barrell, Emily Dimmer, Rachael P. Huntley et al. · Nucleic Acids Research · 2008 · 554 citations · Full text