The Journal of Cell Biology · 2011 · 157 citations · 39 references
Life SciencesBiochemistryMolecular BiologyApoptosisProtein-protein InteractionsStructural BiologyBcl-2 Family ProteinsCytochrome C ReleaseIntrinsic Apoptotic PathwayMacromolecular AssemblyMitochondrial Outer Membrane PermeabilizationProtein StructureBak OligomerizationMacromolecular Complex FormationMembrane PermeabilizationPro-apoptotic Bak ActivationPro-apoptotic Bcl-2 ProteinsProapoptotic Bcl-2 ProteinsSurface Plasmon Resonance AnalysisTransient Protein-protein Interactions
The mechanism by which the proapoptotic Bcl-2 family members Bax and Bak release cytochrome c from mitochondria is incompletely understood. In this paper, we show that activator BH3-only proteins bind tightly but transiently to the Bak hydrophobic BH3-binding groove to induce Bak oligomerization, liposome permeabilization, mitochondrial cytochrome c release, and cell death. Analysis by surface plasmon resonance indicated that the initial binding of BH3-only proteins to Bak occurred with similar kinetics with or without detergent or mitochondrial lipids, but these reagents increase the strength of the Bak-BH3-only protein interaction. Point mutations in Bak and reciprocal mutations in the BH3-only proteins not only confirmed the identity of the interacting residues at the Bak-BH3-only protein interface but also demonstrated specificity of complex formation in vitro and in a cellular context. These observations indicate that transient protein-protein interactions involving the Bak BH3-binding groove initiate Bak oligomerization and activation.
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Molecular dynamics with coupling to an external bath
Herman J. C. Berendsen, Johan P. M. Postma, Wilfred F. van Gunsteren et al. · The Journal of Chemical Physics · 1984 · 31K citations · Full text
Natural Sciences, Chemistry, Physics +17
The Amber biomolecular simulation programs
David A. Case, Thomas E. Cheatham, Tom Darden et al. · Journal of Computational Chemistry · 2005 · 9.6K citations · Full text