Concepedia

Analysis of alternative cleavage and polyadenylation by 3′ region extraction and deep sequencing

Mainul Hoque, Zhe Ji, Dinghai Zheng, Wenting Luo, Wencheng Li, Bei You, Ji Yeon Park, Ghassan Yehia, Bin Tian

Nature Methods · 2012 · 462 citations · 36 references

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36

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

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Alternative isoform regulation in human tissue transcriptomes

Eric T. Wang, Rickard Sandberg, Shujun Luo et al. · Nature · 2008 · 5.4K citations · Full text

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

Adam Siepel, Gill Bejerano, Jakob Skou Pedersen et al. · Genome Research · 2005 · 4.3K citations · Full text

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A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

PLoS Biology · 2011 · 1.6K citations · Full text

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