Bioinformatics · 2011 · 130 citations · 9 references
Bambino is written in platform-independent Java and available from https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/index.html, along with documentation and example data. Bambino may be launched online via Java Web Start or downloaded and run locally.
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 64.7K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 60.7K citations · Full text
Base-Calling of Automated Sequencer Traces Using<i>Phred.</i> I. Accuracy Assessment
Brent Ewing, LaDeana Hillier, Michael C. Wendl et al. · Genome Research · 1998 · 7K citations · Full text
<i>Consed:</i> A Graphical Tool for Sequence Finishing
David Gordon, Chris Abajian, Phil Green · Genome Research · 1998 · 3.3K citations · Full text
The UCSC Genome Browser database: update 2011
Pauline A. Fujita, Brooke Rhead, Ann S. Zweig et al. · Nucleic Acids Research · 2010 · 1.9K citations · Full text