Bioinformatics · 2010 · 257 citations · 6 references
Life SciencesBioinformaticsGeneticsGenomic Data AnalysisGenomicsQuantitative GeneticsGenome VisualizationGenomic Data VisualizationGenotyping PlatformsHigh-throughput GenotypingQuantitative Trait LociQuantitative Trait Loci MappingInteractive Genomic VisualizationNavigationReal-time ProcessingScalable Genomic Data VisualizationSingle-nucleotide Polymorphism AnalysisSnp VisualizationVariant VisualizationVariation Visualization
SUMMARY: New software tools for graphical genotyping are required that can routinely handle the large data volumes generated by the high-throughput single-nucleotide polymorphism (SNP) platforms, genotyping-by-sequencing and other comparable genotyping technologies. Flapjack has been developed to facilitate analysis of these data, providing real time rendering with rapid navigation and comparisons between lines, markers and chromosomes, with visualization, sorting and querying based on associated data, such as phenotypes, quantitative trait loci or other mappable features. AVAILABILITY: Flapjack is freely available for Microsoft Windows, Mac OS X, Linux and Solaris, and can be downloaded from http://bioinf.scri.ac.uk/flapjack .
6
Genetic Properties of the Maize Nested Association Mapping Population
Michael D. McMullen, Stephen Kresovich, Hector Sanchez Villeda et al. · Science · 2009 · 1.1K citations
Life Sciences, Agronomy, Genetics +17