PLoS ONE · 2014 · 72 citations · 53 references
Life SciencesMicrobiologyMolecular BiologyMicrobial GeneticsMicrobial MetabolismNatural Product BiosynthesisFatty Acid BiosynthesisFatty Acid MetabolismFatty Acid SynthesisLipid BiosynthesisMicrobial Natural Product BiosynthesisPolyketide BiosynthesisBacterial Fatty Acid BiosynthesisFatty Acid Biosynthetic EnzymesFatty Acid Precursor BiosynthesisNonribosomal Peptide Synthetase ComplexesNonribosomal Peptide Synthetase Pathways
A putative operon encoding the biosynthetic pathway for the cytotoxic cyanobacterial lipopeptides puwainphycins was identified in Cylindrospermum alatosporum. Bioinformatics analysis enabled sequential prediction of puwainaphycin biosynthesis; this process is initiated by the activation of a fatty acid residue via fatty acyl-AMP ligase and continued by a multidomain non-ribosomal peptide synthetase/polyketide synthetase. High-resolution mass spectrometry and nuclear magnetic resonance spectroscopy measurements proved the production of puwainaphycin F/G congeners differing in FA chain length formed by either 3-amino-2-hydroxy-4-methyl dodecanoic acid (4-methyl-Ahdoa) or 3-amino-2-hydroxy-4-methyl tetradecanoic acid (4-methyl-Ahtea). Because only one puwainaphycin operon was recovered in the genome, we suggest that the fatty acyl-AMP ligase and one of the amino acid adenylation domains (Asn/Gln) show extended substrate specificity. Our results provide the first insight into the biosynthesis of frequently occurring β-amino fatty acid lipopeptides in cyanobacteria, which may facilitate analytical assessment and development of monitoring tools for cytotoxic cyanobacterial lipopeptides.
53
InterProScan 5: genome-scale protein function classification
Philip Jones, David Binns, Hsin-Yu Chang et al. · Bioinformatics · 2014 · 10K citations · Full text
Life Sciences, Bioinformatics, High-performance Computing +8
Identifying bacterial genes and endosymbiont DNA with Glimmer
Arthur L. Delcher, Kirsten A. Bratke, Edwin C. Powers et al. · Bioinformatics · 2007 · 3.2K citations · Full text