Biochemistry · 2001 · 63 citations · 21 references
Life SciencesBiochemistryMicrobiologyEnzymologyProtein BiochemistryStructural BiologyEnzyme FunctionEnzyme StructureEnzyme-substrate RecognitionProtein StructureStructural EnzymologyX-ray CrystallographyBacillus SubtilisComparative X-ray CrystallographyCrystal Structure AnalysisProtein CrystallographySubstrate Binding AffinitySubstrate Binding SitesSubstrate Binding SpecificityX-ray Crystallography-based Structure Determination
The X-ray crystal structure of the substrate free form of Staphylococcus aureus UDP-N-acetylenolpyruvylglucosamine reductase (MurB) has been solved to 2.3 A resolution with an R-factor of 20.3% and a free R-factor of 22.3%. While the overall fold of the S. aureus enzyme is similar to that of the homologous Escherichia coli MurB X-ray crystal structure, notable distinctions between the S. aureus and E. coli MurB protein structures occur in residues involved in substrate binding. Analysis of available MurB sequences from other bacteria suggest that the S. aureus MurB structure is representative of a distinct structural class of UDP-N-acetylenolpyruvylglucosamine reductases including Bacillus subtilis and Helicobacter pylori that are characterized by a modified mechanism for substrate binding.
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Crystallographic refinement by simulated annealing
Axel T. Brünger · Journal of Molecular Biology · 1988 · 406 citations
Protein Hydration Observed by X-ray Diffraction
Jiansheng Jiang, Axel T. Brünger · Journal of Molecular Biology · 1994 · 353 citations · Full text