Journal of Bacteriology · 2011 · 55 citations · 19 references
EngineeringGeneticsGlycobiologyGenomicsMicrobial EvolutionComplete Genome SequencesBiosynthesisAnaerobic CulturingPolysaccharide DegradationBiochemical TaxonomyBioenergeticsMicrobial EcologyEnvironmental MicrobiologyProkaryotic SystemBiochemistryBiologyMicrobial SystematicsAdditional GenomesGenome SequencingMicrobiologyMedicineHemicelluloseGenus CaldicellulosiruptorMicrobial Genetics
The genus Caldicellulosiruptor contains the most thermophilic, plant biomass-degrading bacteria isolated to date. Previously, genome sequences from three cellulolytic members of this genus were reported (C. saccharolyticus, C. bescii, and C. obsidiansis). To further explore the physiological and biochemical basis for polysaccharide degradation within this genus, five additional genomes were sequenced: C. hydrothermalis, C. kristjanssonii, C. kronotskyensis, C. lactoaceticus, and C. owensensis. Taken together, the seven completed and one draft-phase Caldicellulosiruptor genomes suggest that, while central metabolism is highly conserved, significant differences in glycoside hydrolase inventories and numbers of carbohydrate transporters exist, a finding which likely relates to variability observed in plant biomass degradation capacity.
19
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino, Ewan Birney · Genome Research · 2008 · 9.6K citations · Full text
Genome sequencing in microfabricated high-density picolitre reactors
Marcel Margulies, William E. Altman, Said Attiya et al. · Nature · 2005 · 7.6K citations · Full text
Base-Calling of Automated Sequencer Traces Using<i>Phred.</i> I. Accuracy Assessment
Brent Ewing, LaDeana Hillier, Michael C. Wendl et al. · Genome Research · 1998 · 7K citations · Full text