Biochemistry · 2013 · 17 citations · 12 references
Life SciencesBiochemistryMolecular BiologyEnzyme MechanismEnzymologyStructural BiologyCatalytic MechanismsEnzyme KineticsEnzyme StructureProtein DynamicsProtein Dynamics In CatalysisStructural EnzymologyEnzyme Conformational DynamicsIntrinsic FluorescenceKinetic Transient AnalysisProtein Conformational ChangesProtein Conformational DynamicsProtein Dynamics AnalysisSubstrate Binding-induced ChangeTransient Kinetic Analysis
Heptosyltransferase I (HepI), the enzyme responsible for the transfer of l-glycero-d-manno-heptose to a 3-deoxy-α-d-manno-oct-2-ulopyranosonic acid (Kdo) of the growing core region of lipopolysaccharide, is a member of the GT-B structural class of enzymes. Crystal structures have revealed open and closed conformations of apo and ligand-bound GT-B enzymes, implying that large-scale protein conformational dynamics play a role in their reaction mechanism. Here we report transient kinetic analysis of conformational changes in HepI reported by intrinsic tryptophan fluorescence and present the first real-time evidence of a GT-B enzyme undergoing a substrate binding-induced transition from an open to closed state prior to catalysis.
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Brownian motion in a field of force and the diffusion model of chemical reactions
H. A. Kramers · Physica · 1940 · 8.6K citations
Natural Sciences, Chemistry, Physics +16