Concepedia

Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study

Sheng Li, Scott Tighe, Charles M. Nicolet, Deborah Grove, Shawn Levy, William G. Farmerie, Agnès Viale, Chris Wright, Peter A. Schweitzer, Yuan Gao,

Nature Biotechnology · 2014 · 261 citations · 50 references

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50

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

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<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna, Matthew G. Hanna, Eric Banks et al. · Genome Research · 2010 · 30K citations · Full text

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The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

Stephen A. Bustin, Vladimı́r Beneš, Jeremy A. Garson et al. · Clinical Chemistry · 2009 · 16.1K citations · Full text

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

A Mortazavi, Brian A. Williams, Kenneth McCue et al. · Nature Methods · 2008 · 14.3K citations

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