Molecular Dynamics—Solvated Interaction Energy Studies of Protein–Protein Interactions: The MP1–p14 Scaffolding Complex

References

Page 1

	Year	Citations
Comparison of simple potential functions for simulating liquid water William L. Jorgensen, Jayaraman Chandrasekhar, Jeffry D. Madura, The Journal of Chemical Physics EngineeringLiquid-liquid FlowFluid MechanicsComputational ChemistryChemistry	1983	41.1K
The Protein Data Bank Helen M. Berman Nucleic Acids Research Biological DatabaseBiochemistryStructural BioinformaticsNatural SciencesMedicine	2000	38.9K
<i>Coot</i>: model-building tools for molecular graphics Paul Emsley, Kevin Cowtan Acta Crystallographica Section D Biological Crystallography	2004	31K
Particle mesh Ewald: An <i>N</i>⋅log(<i>N</i>) method for Ewald sums in large systems Tom Darden, Darrin M. York, Lee G. Pedersen The Journal of Chemical Physics Numerical AnalysisEngineeringElectrostatic EnergiesParticle MethodComputational Chemistry	1993	29.8K
PROCHECK: a program to check the stereochemical quality of protein structures Roman A. Laskowski, Malcolm W. MacArthur, D. S. Moss, Journal of Applied Crystallography Protein StructuresProcheck SuiteProtein AssemblyBiochemistryProtein Folding	1993	24.4K
Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes Jean-Paul Ryckaert, Giovanni Ciccotti, Herman J. C. Berendsen Journal of Computational Physics Numerical AnalysisCartesian EquationsEngineeringPhysicsNumerical Integration	1977	21.1K
Refinement of Macromolecular Structures by the Maximum-Likelihood Method Garib N. Murshudov, A. A. Vagin, E. J. Dodson Acta Crystallographica Section D Biological Crystallography	1997	14.8K
The Amber biomolecular simulation programs David A. Case, Thomas E. Cheatham, Tom Darden, Journal of Computational Chemistry	2005	9.4K
Calculating Structures and Free Energies of Complex Molecules: Combining Molecular Mechanics and Continuum Models Peter A. Kollman, Irina Massova, Carolina Reyes, Accounts of Chemical Research	2000	4.8K
A point‐charge force field for molecular mechanics simulations of proteins based on condensed‐phase quantum mechanical calculations Yong Duan, Chun Wu, Shibasish Chowdhury, Journal of Computational Chemistry Protein ChemistryEngineeringMolecular Mechanics ModelsProtein FoldingMolecular Biology	2003	4.4K

Page 1